PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G082900.1
Common NamePHAVU_001G082900g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TCP
Protein Properties Length: 372aa    MW: 39043.6 Da    PI: 6.5117
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G082900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.41.8e-3624116288
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec.eaesssssas.ns 85 
                         +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l+ +     +  + ++  ++++s +++  n+
  Phvul.001G082900.1  24 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKAAIDQLAHLppwkpT-LPTTNYlNDDESDKTNPnNP 113
                         79**************************************************************766641.22222222222211111011 PP

                 TCP  86 ssg 88 
                         +s+
  Phvul.001G082900.1 114 NST 116
                         111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.7E-3224109IPR005333Transcription factor, TCP
PROSITE profilePS5136933.7762684IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MVRGGGGGGG EIVEVEGGHI VRSTGRKDRH SKVCTAKGPR DRRVRLSAHT AIQFYDVQDR  60
LGYDRPSKAV DWLINKAKAA IDQLAHLPPW KPTLPTTNYL NDDESDKTNP NNPNSTANAN  120
TNPDAEILNQ FNENLENDGG GGGGAGGGGG GGGSSYLPLD NDTIRSFFPI TTSSLIQFQS  180
YPPDLLSRTS SQDLRLSLQS LQDPIMLHHN QNEPVLFAGA GFDNMVAWNN SGNANNDTHG  240
GGGGGGFVLN APSPLPGPAT VASPAVVFGY GNGNGQGQYF SQRGPLQSSN TPSVRAWIDA  300
PSFVAAADHY HRHHYLSPAA AAAALVYQSS PSSAFAPGGF SGFRVPARIQ GEEEHDGVSD  360
KPSSASSDSR R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161598.10.0hypothetical protein PHAVU_001G082900g
SwissprotQ8LPR53e-83TCP4_ARATH; Transcription factor TCP4
TrEMBLV7CTS60.0V7CTS6_PHAVU; Uncharacterized protein
STRINGGLYMA13G34690.21e-162(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.11e-52TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3